Hooping in both directions can provide benefits to your body. In order to maintain a healthy balance physically, it is important to work both sides of your body.
Its easy to get into the habit of only hooping in your natural direction, it is equally important to practice both directions equally.
Make a note in your daily practice routine to pick up your hoop and spin in your non-dominant direction to a song, or a hoop practice sequence, or even just a few minutes each day. Build up a practice in your opposite natural direction until you no can feel comfortable and confident doing the two.